SQLite WebAssembly micro-benchmark and new build with a memory leak fix (#70)

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saaj authored and GitHub committed 2021-08-05 18:35:31 +02:00
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commit 848112979b
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benchmark
dist
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/lib/build-*
/lib/dist
/build-*-result.json
/sample.csv
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FROM node:12-buster
RUN set -ex; \
echo 'deb http://deb.debian.org/debian unstable main' \
> /etc/apt/sources.list.d/unstable.list; \
apt-get update; \
apt-get install -y -t unstable firefox; \
apt-get install -y chromium
WORKDIR /tmp/build
COPY package.json ./
COPY lib/dist lib/dist
COPY lib/package.json lib/package.json
RUN npm install
COPY . .
CMD npm run benchmark
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# SQLite WebAssembly build micro-benchmark
This directory contains a micro-benchmark for evaluating SQLite
WebAssembly builds performance on typical SQL queries, run from
`make.sh` script. It can also serve as a smoke test.
The benchmark operates on a set of SQLite WebAssembly builds expected
in `lib/build-$NAME` directories each containing `sql-wasm.js` and
`sql-wasm.wasm`. Then it creates a Docker image for each, and runs
the benchmark in Firefox and Chromium using Karma in the container.
After successful run, the benchmark result of each build is contained
in `build-$NAME-result.json`. The JSON result files can be analysed
using `result-analysis.ipynb` Jupyter notebook.
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module.exports = function (config) {
const timeout = 15 * 60 * 1000
config.set({
frameworks: ['mocha'],
files: [
'suite.js',
{ pattern: 'node_modules/sql.js/dist/sql-wasm.wasm', served: true, included: false },
{ pattern: 'sample.csv', served: true, included: false }
],
reporters: ['progress', 'json-to-file'],
singleRun: true,
customLaunchers: {
ChromiumHeadlessNoSandbox: { base: 'ChromiumHeadless', flags: ['--no-sandbox'] }
},
browsers: ['ChromiumHeadlessNoSandbox', 'FirefoxHeadless'],
concurrency: 1,
browserDisconnectTimeout: timeout,
browserNoActivityTimeout: timeout,
captureTimeout: timeout,
browserSocketTimeout: timeout,
pingTimeout: timeout,
client: {
captureConsole: true,
mocha: { timeout: timeout }
},
logLevel: config.LOG_INFO,
browserConsoleLogOptions: { terminal: true, level: config.LOG_INFO },
preprocessors: { 'suite.js': [ 'webpack' ] },
webpack: {
mode: 'development',
module: {
noParse: [ __dirname + '/node_modules/benchmark/benchmark.js' ]
},
node: { fs: 'empty' }
},
proxies: {
'/sql-wasm.wasm': '/base/node_modules/sql.js/dist/sql-wasm.wasm'
},
jsonToFileReporter: { outputPath: '.', fileName: 'suite-result.json' }
})
}
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{
"name": "sql.js",
"main": "./dist/sql-wasm.js",
"private": true
}
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#!/bin/bash -e
if [ ! -f sample.csv ]; then
wget --header="accept-encoding: gzip" -q -O- \
https://github.com/plotly/datasets/raw/547090bd/wellspublic.csv \
| gunzip -c > sample.csv
fi
for d in lib/build-* ; do
rm -r lib/dist || true
cp -r $d lib/dist
name=$(basename $d)
docker build -t sqliteviz/sqljs-benchmark:$name .
docker rm sqljs-benchmark-$name 2> /dev/null || true
docker run -it --name sqljs-benchmark-$name sqliteviz/sqljs-benchmark:$name
docker cp sqljs-benchmark-$name:/tmp/build/suite-result.json ${name}-result.json
docker rm sqljs-benchmark-$name
done
rm -r lib/dist
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{
"name": "sqlite-webassembly-microbenchmark",
"private": true,
"dependencies": {
"@babel/core" : "^7.14.8",
"babel-loader": "^8.2.2",
"benchmark": "^2.1.4",
"lodash": "^4.17.4",
"papaparse": "^5.3.1",
"mocha": "^9.0.3",
"karma": "^6.3.4",
"karma-chrome-launcher": "^3.1.0",
"karma-firefox-launcher": "^2.1.1",
"karma-json-to-file-reporter" : "^1.0.1",
"karma-mocha": "^2.0.1",
"karma-webpack": "^4.0.2",
"webpack": "^4.46.0",
"sql.js": "file:./lib"
},
"scripts": {
"benchmark": "karma start karma.conf.js"
}
}
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{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"id": "2e7d8525",
"metadata": {},
"outputs": [],
"source": [
"import json\n",
"from pathlib import Path\n",
"\n",
"import pandas\n",
"import plotly.express as px"
]
},
{
"cell_type": "code",
"execution_count": 2,
"id": "0f420fe2",
"metadata": {},
"outputs": [],
"source": [
"benchmark_path = Path('/path/to/sqliteviz/project/sqliteviz/lib/sql-js/benchmark')"
]
},
{
"cell_type": "code",
"execution_count": 3,
"id": "b7d79c6c",
"metadata": {},
"outputs": [],
"source": [
"df_dict = {}\n",
"stat_dict = {}\n",
"for p in benchmark_path.glob('build-*-result.json'):\n",
" build_name = p.stem.split('-', 2)[1]\n",
" for browser_data in json.loads(p.read_text()):\n",
" browser_name = f'{browser_data[\"browser\"][\"name\"]} {browser_data[\"browser\"][\"major\"]}'\n",
" browser_name = browser_name.lower().replace('chrome headless', 'chromium')\n",
" for result in (r for i, r in browser_data['result'].items() if i.isdigit()):\n",
" key = build_name, browser_name, result['name']\n",
" df_dict[key] = result['stats']['sample']\n",
" stat_dict[key] = result['stats']\n",
"\n",
"min_sample_size = min(len(v) for v in df_dict.values())\n",
"df_dict = {k: v[:min_sample_size] for k, v in df_dict.items()}\n",
" \n",
"wide_df = pandas.DataFrame(df_dict).reset_index()\n",
"df = pandas.melt(\n",
" wide_df, \n",
" id_vars='index', \n",
" var_name=['build', 'browser', 'test'], \n",
" value_name='duration',\n",
")\n",
"df.sort_values(['build', 'index'], inplace=True)"
]
},
{
"cell_type": "code",
"execution_count": 4,
"id": "bc655c11",
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"pr\tfirefox 88\tselect\t0.20 s ± 1.5%\n",
"master\tfirefox 88\tselect\t0.22 s ± 1.3%\n",
"pr\tchromium 90\tselect\t0.18 s ± 1.1%\n",
"master\tchromium 90\tselect\t0.18 s ± 0.5%\n",
"pr\tfirefox 88\timport\t2.37 s ± 4.3%\n",
"master\tfirefox 88\timport\t2.64 s ± 2.6%\n",
"pr\tchromium 90\timport\t1.67 s ± 0.7%\n",
"master\tchromium 90\timport\t1.74 s ± 1.8%\n"
]
}
],
"source": [
"stat_df = pandas.DataFrame(stat_dict)\n",
"stat_df = stat_df.loc[['mean', 'rme']].transpose()\n",
"stat_df.index = stat_df.index.set_names(['build', 'browser', 'test'])\n",
"stat_df = stat_df.reset_index().sort_values(['test', 'browser'], ascending=False)\n",
"for index, row in stat_df.iterrows():\n",
" print('\\t'.join([\n",
" row['build'],\n",
" row['browser'],\n",
" row['test'],\n",
" f'{row[\"mean\"]:.2f} s ± {row[\"rme\"]:.1f}%'\n",
" ]))"
]
},
{
"cell_type": "code",
"execution_count": 5,
"id": "5a3ab654",
"metadata": {},
"outputs": [
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"metadata": {},
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}
],
"source": [
"fig = px.box(df, x='browser', y='duration', points='all', color='build', facet_row='test')\n",
"fig.update_yaxes(matches=None)\n",
"fig.show('svg')"
]
},
{
"cell_type": "code",
"execution_count": 6,
"id": "1619018c",
"metadata": {},
"outputs": [
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"source": [
"fig = px.line(\n",
" df, x='index', y='duration', color='build', facet_col='browser', facet_row='test'\n",
")\n",
"fig.update_yaxes(matches=None)\n",
"fig.show('svg')"
]
},
{
"cell_type": "code",
"execution_count": 7,
"id": "397b848c",
"metadata": {},
"outputs": [
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]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"plot_df = df.groupby(['browser', 'build', 'test'])['duration'].mean().reset_index()\n",
"plot_df['pct'] = (\n",
" plot_df\n",
" .groupby(['browser', 'test'])['duration']\n",
" .pct_change()\n",
" .fillna('')\n",
" .map(lambda v: '{:.2%}'.format(v) if v else v)\n",
")\n",
"fig = px.bar(\n",
" plot_df, \n",
" x='browser', \n",
" y='duration', \n",
" color='build', \n",
" text='pct', \n",
" barmode='overlay', \n",
" facet_row='test',\n",
")\n",
"fig.update_yaxes(matches=None)\n",
"fig.show('svg')"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Stats Python 3",
"language": "python",
"name": "stats"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.9"
},
"widgets": {
"application/vnd.jupyter.widget-state+json": {
"state": {},
"version_major": 2,
"version_minor": 0
}
}
},
"nbformat": 4,
"nbformat_minor": 5
}
+140
View File
@@ -0,0 +1,140 @@
import benchmark from 'benchmark'
import initSqlJs from 'sql.js'
import lodash from 'lodash'
import Papa from 'papaparse'
import useragent from 'ua-parser-js'
describe('SQLite build benchmark', function () {
let parsedCsv
let sqlModule
let selectDb
before(async function () {
parsedCsv = await parseCsv('http://localhost:9876/base/sample.csv')
sqlModule = await initSqlJs()
selectDb = new sqlModule.Database()
importToTable(selectDb, parsedCsv)
})
function benchmarkImport () {
const db = new sqlModule.Database()
try {
importToTable(db, parsedCsv)
} finally {
db.close()
}
}
function benchmarkSelect () {
const result = selectDb.exec(`
SELECT county, AVG(avg_depth) avg_depth_c
FROM (
SELECT s.county, s.town, COUNT(*) cnt, AVG(s.DrilledDepth) avg_depth
FROM csv_import s
JOIN csv_import USING(hole)
WHERE s.town IS NOT NULL
GROUP BY 1, 2
ORDER BY 4 DESC
)
GROUP BY 1
ORDER BY 2 DESC
`)
console.assert(result.values.length == 56, 'Unexpected size of result set')
}
it('run', async function () {
const suite = createSuite()
suite.add('import', { initCount: 3, minSamples: 50, fn: benchmarkImport })
suite.add('select', { initCount: 3, minSamples: 50, fn: benchmarkSelect })
await run(suite)
})
})
function importToTable (db, parsedCsv, chunkSize = 1024) {
const columnListString = parsedCsv.meta.fields.join(', ')
db.exec(`CREATE TABLE csv_import(${columnListString})`)
const params = parsedCsv.meta.fields.map(name => '?').join(', ')
const insertStmt = db.prepare(`INSERT INTO csv_import VALUES(${params})`)
chunkArray(parsedCsv.data, chunkSize).map(function (chunk) {
db.exec('BEGIN')
chunk.map(row => insertStmt.run(Object.values(row)))
db.exec('COMMIT')
})
}
class PromiseWrapper {
constructor() {
this.promise = new Promise((resolve, reject) => {
this.reject = reject
this.resolve = resolve
})
}
}
function parseCsv(url) {
return new Promise((resolve, reject) => {
Papa.parse(url, {
header: true,
download: true,
skipEmptyLines: 'greedy',
complete: results => resolve(results),
error: (error, file) => reject(error)
})
})
}
function chunkArray (arr, size) {
return arr.reduce(function (result, value, index) {
const chunkIndex = Math.floor(index / size)
if(!(chunkIndex in result)) {
result[chunkIndex] = []
}
result[chunkIndex].push(value)
return result
}, [])
}
function createSuite () {
// Combined workaround from:
// - https://github.com/bestiejs/benchmark.js/issues/106
// - https://github.com/bestiejs/benchmark.js/issues/237
// Benchmark could not pick up lodash otherwise
const bm = benchmark.runInContext({ _: lodash })
// Avoid `ReferenceError: Benchmark is not defined` error because Benchmark is assumed
// to be in window
window.Benchmark = bm
return new bm.Suite()
}
function run (suite) {
const suiteResult = new PromiseWrapper()
suite
.on('cycle', function (event) {
console.info(String(event.target))
})
.on('complete', function () {
console.log(JSON.stringify({
browser: useragent(navigator.userAgent).browser,
result: this.filter('successful')
}))
suiteResult.resolve()
})
.on('error', function (event) {
console.error('Benchmark failed', String(event.target))
suiteResult.reject()
})
.run({async: true})
return suiteResult.promise
}
+8 -5
View File
@@ -5,17 +5,21 @@ from pathlib import Path
cflags = (
'-O2',
'-DSQLITE_OMIT_LOAD_EXTENSION',
'-DSQLITE_DEFAULT_CACHE_SIZE=-65536', # 64 MiB
'-DSQLITE_DEFAULT_MEMSTATUS=0',
'-DSQLITE_DEFAULT_SYNCHRONOUS=0',
'-DSQLITE_DISABLE_LFS',
'-DSQLITE_DQS=0',
'-DSQLITE_ENABLE_FTS3',
'-DSQLITE_ENABLE_FTS3_PARENTHESIS',
'-DSQLITE_ENABLE_FTS5',
'-DSQLITE_ENABLE_JSON1',
'-DSQLITE_THREADSAFE=0',
'-DSQLITE_ENABLE_NORMALIZE',
'-DSQLITE_EXTRA_INIT=extra_init',
'-DSQLITE_DEFAULT_MEMSTATUS=0',
'-DSQLITE_USE_ALLOCA',
'-DSQLITE_OMIT_DEPRECATED',
'-DSQLITE_OMIT_LOAD_EXTENSION',
'-DSQLITE_OMIT_SHARED_CACHE',
'-DSQLITE_THREADSAFE=0',
)
emflags = (
# Base
@@ -30,7 +34,6 @@ emflags = (
'-s', 'INLINING_LIMIT=50',
'-O3',
'-flto',
'--closure', '1',
# sql.js
'-s', 'EXPORTED_FUNCTIONS=@src/sqljs/exported_functions.json',
'-s', 'EXPORTED_RUNTIME_METHODS=@src/sqljs/exported_runtime_methods.json',
+1 -108
View File
@@ -69,114 +69,7 @@ var initSqlJs = function (moduleConfig) {
// The emcc-generated code and shell-post.js code goes below,
// meaning that all of it runs inside of this promise. If anything throws an exception, our promise will abort
var e;e||(e=typeof Module !== 'undefined' ? Module : {});null;
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e._sqlite3_result_text=function(){return(e._sqlite3_result_text=e.asm.fa).apply(null,arguments)};e._sqlite3_column_count=function(){return(e._sqlite3_column_count=e.asm.ga).apply(null,arguments)};e._sqlite3_data_count=function(){return(e._sqlite3_data_count=e.asm.ha).apply(null,arguments)};e._sqlite3_column_blob=function(){return(e._sqlite3_column_blob=e.asm.ia).apply(null,arguments)};e._sqlite3_column_bytes=function(){return(e._sqlite3_column_bytes=e.asm.ja).apply(null,arguments)};
e._sqlite3_column_double=function(){return(e._sqlite3_column_double=e.asm.ka).apply(null,arguments)};e._sqlite3_column_text=function(){return(e._sqlite3_column_text=e.asm.la).apply(null,arguments)};e._sqlite3_column_type=function(){return(e._sqlite3_column_type=e.asm.ma).apply(null,arguments)};e._sqlite3_column_name=function(){return(e._sqlite3_column_name=e.asm.na).apply(null,arguments)};e._sqlite3_bind_blob=function(){return(e._sqlite3_bind_blob=e.asm.oa).apply(null,arguments)};
e._sqlite3_bind_double=function(){return(e._sqlite3_bind_double=e.asm.pa).apply(null,arguments)};e._sqlite3_bind_int=function(){return(e._sqlite3_bind_int=e.asm.qa).apply(null,arguments)};e._sqlite3_bind_text=function(){return(e._sqlite3_bind_text=e.asm.ra).apply(null,arguments)};e._sqlite3_bind_parameter_index=function(){return(e._sqlite3_bind_parameter_index=e.asm.sa).apply(null,arguments)};e._sqlite3_sql=function(){return(e._sqlite3_sql=e.asm.ta).apply(null,arguments)};
e._sqlite3_normalized_sql=function(){return(e._sqlite3_normalized_sql=e.asm.ua).apply(null,arguments)};e._sqlite3_errmsg=function(){return(e._sqlite3_errmsg=e.asm.va).apply(null,arguments)};e._sqlite3_exec=function(){return(e._sqlite3_exec=e.asm.wa).apply(null,arguments)};e._sqlite3_changes=function(){return(e._sqlite3_changes=e.asm.xa).apply(null,arguments)};e._sqlite3_close_v2=function(){return(e._sqlite3_close_v2=e.asm.ya).apply(null,arguments)};
e._sqlite3_create_function_v2=function(){return(e._sqlite3_create_function_v2=e.asm.za).apply(null,arguments)};e._sqlite3_open=function(){return(e._sqlite3_open=e.asm.Aa).apply(null,arguments)};var ca=e._malloc=function(){return(ca=e._malloc=e.asm.Ba).apply(null,arguments)},oa=e._free=function(){return(oa=e._free=e.asm.Ca).apply(null,arguments)};e._RegisterExtensionFunctions=function(){return(e._RegisterExtensionFunctions=e.asm.Ea).apply(null,arguments)};
var qb=e.__get_tzname=function(){return(qb=e.__get_tzname=e.asm.Fa).apply(null,arguments)},pb=e.__get_daylight=function(){return(pb=e.__get_daylight=e.asm.Ga).apply(null,arguments)},ob=e.__get_timezone=function(){return(ob=e.__get_timezone=e.asm.Ha).apply(null,arguments)},pa=e.stackSave=function(){return(pa=e.stackSave=e.asm.Ia).apply(null,arguments)},ra=e.stackRestore=function(){return(ra=e.stackRestore=e.asm.Ja).apply(null,arguments)},y=e.stackAlloc=function(){return(y=e.stackAlloc=e.asm.Ka).apply(null,
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function fd(){function a(){if(!dd&&(dd=!0,e.calledRun=!0,!Qa)){e.noFSInit||Pc||(Pc=!0,Oc(),e.stdin=e.stdin,e.stdout=e.stdout,e.stderr=e.stderr,e.stdin?Qc("stdin",e.stdin):cc("/dev/tty","/dev/stdin"),e.stdout?Qc("stdout",null,e.stdout):cc("/dev/tty","/dev/stdout"),e.stderr?Qc("stderr",null,e.stderr):cc("/dev/tty1","/dev/stderr"),v("/dev/stdin",0),v("/dev/stdout",1),v("/dev/stderr",1));Nb=!1;kb(ab);if(e.onRuntimeInitialized)e.onRuntimeInitialized();if(e.postRun)for("function"==typeof e.postRun&&(e.postRun=
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sqlite3_bind_text=cwrap("sqlite3_bind_text","number",["number","number","number","number","number"]);var sqlite3_bind_blob=cwrap("sqlite3_bind_blob","number",["number","number","number","number","number"]);var sqlite3_bind_double=cwrap("sqlite3_bind_double","number",["number","number","number"]);var sqlite3_bind_int=cwrap("sqlite3_bind_int","number",["number","number","number"]);var sqlite3_bind_parameter_index=cwrap("sqlite3_bind_parameter_index","number",["number","string"]);var sqlite3_step=cwrap("sqlite3_step","number",["number"]);var sqlite3_errmsg=cwrap("sqlite3_errmsg","string",["number"]);var sqlite3_column_count=cwrap("sqlite3_column_count","number",["number"]);var sqlite3_data_count=cwrap("sqlite3_data_count","number",["number"]);var sqlite3_column_double=cwrap("sqlite3_column_double","number",["number","number"]);var sqlite3_column_text=cwrap("sqlite3_column_text","string",["number","number"]);var sqlite3_column_blob=cwrap("sqlite3_column_blob","number",["number","number"]);var sqlite3_column_bytes=cwrap("sqlite3_column_bytes","number",["number","number"]);var sqlite3_column_type=cwrap("sqlite3_column_type","number",["number","number"]);var sqlite3_column_name=cwrap("sqlite3_column_name","string",["number","number"]);var sqlite3_reset=cwrap("sqlite3_reset","number",["number"]);var sqlite3_clear_bindings=cwrap("sqlite3_clear_bindings","number",["number"]);var sqlite3_finalize=cwrap("sqlite3_finalize","number",["number"]);var sqlite3_create_function_v2=cwrap("sqlite3_create_function_v2","number",["number","string","number","number","number","number","number","number","number"]);var sqlite3_value_type=cwrap("sqlite3_value_type","number",["number"]);var sqlite3_value_bytes=cwrap("sqlite3_value_bytes","number",["number"]);var sqlite3_value_text=cwrap("sqlite3_value_text","string",["number"]);var sqlite3_value_blob=cwrap("sqlite3_value_blob","number",["number"]);var sqlite3_value_double=cwrap("sqlite3_value_double","number",["number"]);var sqlite3_result_double=cwrap("sqlite3_result_double","",["number","number"]);var sqlite3_result_null=cwrap("sqlite3_result_null","",["number"]);var sqlite3_result_text=cwrap("sqlite3_result_text","",["number","string","number","number"]);var sqlite3_result_blob=cwrap("sqlite3_result_blob","",["number","number","number","number"]);var sqlite3_result_int=cwrap("sqlite3_result_int","",["number","number"]);var sqlite3_result_error=cwrap("sqlite3_result_error","",["number","string","number"]);var registerExtensionFunctions=cwrap("RegisterExtensionFunctions","number",["number"]);function Statement(stmt1,db){this.stmt=stmt1;this.db=db;this.pos=1;this.allocatedmem=[]}Statement.prototype["bind"]=function bind(values){if(!this.stmt){throw"Statement closed"}this["reset"]();if(Array.isArray(values))return this.bindFromArray(values);if(values!=null&&typeof values==="object"){return this.bindFromObject(values)}return 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field=0;field<ref;field+=1){switch(sqlite3_column_type(this.stmt,field)){case SQLITE_INTEGER:case SQLITE_FLOAT:results1.push(this.getNumber(field));break;case SQLITE_Line truncated
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{
"name": "sql.js",
"main": "./dist/sql-wasm.js"
}
"main": "./dist/sql-wasm.js",
"private": true
}